DIAlign
gapPenalty.h
1 #ifndef GAPPENALTY_H
2 #define GAPPENALTY_H
3 
4 #include <vector>
5 #include "utils.h"
6 #include "similarityMatrix.h"
7 
8 namespace DIAlign
9 {
17  double getGapPenalty(const SimMatrix& s, double gapQuantile, std::string SimType);
18 } // namespace DIAlign
19 
20 #endif // GAPPENALTY_H
DIAlign
Generic namespace for all classes and functions of DIAlign.
Definition: affinealignment.cpp:29
DIAlign::getGapPenalty
double getGapPenalty(const SimMatrix &s, double gapQuantile, std::string SimType)
returns a gap penalty from the distribution of similarity scores.
Definition: gapPenalty.cpp:5